Course talk:CPSC522/Concatenating Hyperspherical Distributions in Hyperspherical VAE

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Critique020:09, 21 April 2023
Critique 2019:52, 21 April 2023
Critique001:48, 21 April 2023

I really liked reading the article. The motivation, experiments and discussion are written very well. A few comments,

- Add a line about batch effects and what regressing out batch effects mean.

- How do you decide the n in S_n to be 2, 5 and 40? and why not gradually increase it?

- Add wiki links to refer to the formula behind Adjusted Rand Index (ARI), Normalized Mutual Information (NMI) and Adjusted Mutual Information (AMI)

MEHARBHATIA (talk)20:09, 21 April 2023

Critique 2

The article reads really well with all aspects being covered. I had a few minor points,

  • Can you rephrase this line, “two high-dimensional cell datasets in a lower but still high-dimensional latent space” because its not clear if the latent space is lower or higher.
  • Results do not include Adjusted Rand Index (ARI), Normalized Mutual Information (NMI) and Adjusted Mutual Information (AMI) for evaluation
  • Zoom out/increase the size of the clustering figures, it is a bit difficult to see the legend.
NIKHILSHENOY (talk)19:52, 21 April 2023

Overall, I found it an interesting experiment into improving hyperspherical VAEs in single-cell analyses.

My specific comments are here: https://drive.google.com/file/d/1E1aImedH-egCShIYgmQlRb7o91P2NFXv/view?usp=sharing

YinianNiu (talk)01:48, 21 April 2023