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Documentation:CHHM/Smart-C

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This page contains basic information relevant to the Smart-C project at the Centre for Hip Health and Mobility. Please feel free to add information that will be helpful to other lab members. Remember that this wiki is publicly viewable - please don't put any information on it that you wish to be kept private (eg, IP-related material).

Shared Resources:

  • We use Colwiz for sharing references - email ahodgson@mech.ubc.ca for an invitation
  • We use Cacoo for our central project planning diagram - view diagram here or email ahodgson@mech.ubc.ca for access
  • We use an email list to make sure no-one gets left out of emails. Subscribe here: [link to come]
  • We use UBC workspace UBC workspace for sharing presentations and other documents
  • CT scans are located in the following folder: Y:\Studies and Projects\Amiri - Intraop Imaging Tools\Data\CT data

Lab Equipment:

Computers

  • Lenovo Y50 - Tiffany
  • Lenovo Y50 - Renee
  • MacBook Pro 2010 - Andrew

NDI Reflective Passive Marker Spheres

  • Spheres (P/N 1201115), QTY:25 - Claire
  • Snap-fit part (P/N 1201101), QTY: 16 - Claire

Team Meetings:

We meet weekly at 1pm on Wednesdays on the 7th floor of the Centre for Hip Health and Mobility (Robert H.N. Ho Research Centre). We also highly recommend attending weekly Orthopaedic Grand Rounds. If you're not on their mailing list, please let me know. They meet Wednesdays from 7-8 am in the Eye Care Centre Auditorium (kitty-corner to ICORD, main floor).

Smart-C Team Members:

  • Engineering Professors: Antony Hodgson (UBC), Shahram Amiri (UBC), Carolyn Anglin (UCalgary)
  • Clinicians: Pierre Guy (Ortho Trauma, UBC), Bas Masri (Joint Recon, UBC), Richard Hu (Spine, UCalgary), Ganesh Swamy (Spine, UCalgary)
  • Industrial Partners: Tangent Engineering (John Person, Calgary), Halifax Biomedical (Erik Giphart, Nova Scotia)
  • Postdoctoral Fellow: Robyn Newell (UBC)
  • Doctoral Students: Hooman Esfandieri (UCalgary)
  • MASc Students: Andrew Meyer (Queen's), Tiffany Ngo (Queen's), Mohammad Amini (Sharif University), Michele Touchette (UBC), Luke Haliburton (Dalhousie)
  • Associated Students (not directly on Smart-C, but closely affiliated): Vivian Chung (MASc, Western) - working on Roentgen Stereophotogrammetric Analysis

Other Lab Members:

  • Vahid Zakeri (PDF, SFU) - cutting sounds for material discrimination
  • Masashi Karasawa (MASc, UBC) - working on a robot for knee surgery
  • Niam Quader (PhD) - ultrasound for developmental dysplasia of the hip
  • Juan Gomez (MASc) - arm and hand movement tracking for post-stroke (with Janice Eng at GF Strong)

Useful Information

Data

Ultrasound Images

Developmental dysplasia of the hip (DDH) scans:

  • Lead: Niam Quader
    • Modality: 2D images and 3D sweeps (untracked)
    • Machine: Ultrasonix (4DL14-5/38 probe)
    • Quantity: 409 sweeps (combination of 2D images and 3D sweeps) from 25 patients, stored in multiple .vol files
    • Location: BiSICL Repository (contact ahodgson@mech.ubc.ca to access)
  • Lead: Olivia Paserin
    • Modality: 3D sweeps (untracked)
    • Machine: Ultrasonix (4DL14-5/38 probe)
    • Quantity: 596 sweeps from 40 patients. Approx 16 sweeps from each patient (neutral->noise->stressed->noise; 4 sweeps in each .vol file/stress state).
    • Location: BiSICL Repository (contact ahodgson@mech.ubc.ca to access)
  • Lead: Houssam El-Hariri
    • Modality: 3D sweeps (untracked)
    • Machine: Clarius
    • Quantity: ~80 sweeps from 40 patients (2 sweeps per patient)
    • Location: BiSICL Repository (contact ahodgson@mech.ubc.ca to access)
  • Lead: Houssam El-Hariri
    • Modality: 3D sweeps (untracked)
    • Machine: Ultrasonix (4DL14-5/38 probe)
    • Quantity: 288 sweeps from 19 patients (~4 sweeps per hip in neutral position)
    • Location: BiSICL Repository (contact ahodgson@mech.ubc.ca to access)

Pelvis

  • Lead: Prash Pandey
    • Modality: 3D reconstructed volumes
    • Machine: Ultrasonix (4DL14-5/38 probe) and NDI Polaris
    • Subject: Agar pelvic phantom
    • Quantity: 15 reconstructed volumes (5 from each of the three superficial structures (left/right iliac spines and pubis)), 24 reconstructed volumes of the full pelvis (12 containing all structures, 12 containing only iliac crests)
    • Note: 0.8mm isotropic pixel resolution. Associated CT scan available with corresponding fiducial locations. Can be used for segmentation and registration analysis.
    • Location: Contact prashant@ece.ubc.ca
  • Lead: Prash Pandey
    • Modality: 2D tracked sweeps and 3D reconstructed volumes
    • Machine: Telemed Micr-US EXT-1H (L12-5L40S-3 probe) and Polaris Vega
    • Subject: Water pelvic phantom with fiducials in sacrum
    • Quantity: 15 raw tracked sequences in .mha format (5 from each of the three superficial structures (left/right iliac spines and pubis)), 12 reconstructed volumes of the full pelvis (containing all structures).
    • Note: 0.3mm isotropic pixel resolution for reconstructed volumes. Associated CT scan available with corresponding fiducial locations. Can be used for segmentation and registration analysis.
    • Location: Contact prashant@ece.ubc.ca
  • Lead: Prash Pandey
    • Modality: 2D tracked sweeps and 3D reconstructed volumes
    • Machine: Telemed Micr-US EXT-1H (L12-5L40S-3 probe) and Polaris Vega
    • Subject: Porcine pelvic phantom with fiducials in sacrum
    • Quantity: 15 raw tracked sequences in .mha format (5 from each of the three superficial structures (left/right iliac spines and pubis)), 12 reconstructed volumes of the full pelvis (containing all structures).
    • Note: 0.3mm isotropic pixel resolution for reconstructed volumes. Associated CT scan available with corresponding fiducial locations. Can be used for segmentation and registration analysis.
    • Location: Contact prashant@ece.ubc.ca
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