UBC Wiki - User contributions [en]

File:Me critical review.jpg

2011-04-05T15:15:39Z

RaniaBenzidane: ABOUT THE CRITICAL REVIEWER NAME: Rania Benzidane DOB: June 15, 1988 LIKES: crêpes, France, Douglas Coupland novels, running, snowboarding DISLIKES: mosquitoes, the excessive amounts of commercials played during a tv movie FAVOURITE COLOUR: blue LAST MOV

ABOUT THE CRITICAL REVIEWER
NAME: Rania Benzidane
DOB: June 15, 1988
LIKES: crêpes, France, Douglas Coupland novels, running, snowboarding
DISLIKES: mosquitoes, the excessive amounts of commercials played during a tv movie
FAVOURITE COLOUR: blue
LAST MOVIE I SAW IN THE THEATRES: Rango

File:Critical review.JPG

2011-04-05T15:10:11Z

File:Kranzws prs 01.jpg

2011-04-05T14:54:53Z

RaniaBenzidane: Figure 3. Rosette system used to collect water samples in Ducklow and Hill’s experiment

Figure 3. Rosette system used to collect water samples in Ducklow and Hill’s experiment

File:Mid atlantic NEAQ new.gif

2011-04-05T14:47:11Z

RaniaBenzidane: Figure 1. Gulf Stream Warm Core Rings (http://disc.sci.gsfc.nasa.gov/oceancolor/additional/science-focus/classic_scenes/06_classics_boundary.shtml )

Figure 1. Gulf Stream Warm Core Rings (http://disc.sci.gsfc.nasa.gov/oceancolor/additional/science-focus/classic_scenes/06_classics_boundary.shtml )

File:Light-microscope-diagram-1.gif

2011-04-05T14:39:24Z

RaniaBenzidane: uploaded a new version of "File:Light-microscope-diagram-1.gif": Figure 2. Epifluorescent microscopy (http://www.google.ca/imgres?imgurl=http://static.howstuffworks.com/gif/light-microscope-diagram-1.gif&imgrefurl=http://www.howstuffworks.co

Figure 2. Epifluorescent microscopy (http://www.google.ca/imgres?imgurl=http://static.howstuffworks.com/gif/light-microscope-diagram-1.gif&imgrefurl=http://www.howstuffworks.com/light-microscope4.htm&usg=__a3YeCsdDu4JGGFIlVGDPpOwUf8A=&h=312&w=346&sz=11&hl=en&start=0&zoom=1&tbnid=MGBA5jBXGWNYsM:&tbnh=147&tbnw=163&ei=wGmaTdu7JYvEsAOl8PiSBA&prev=/images%3Fq%3Depifluorescence%2Bmicroscopy%26um%3D1%26hl%3Den%26sa%3DN%26biw%3D1440%26bih%3D710%26tbm%3Disch&um=1&itbs=1&iact=hc&vpx=132&vpy=74&dur=989&hovh=213&hovw=236&tx=141&ty=95&oei=wGmaTdu7JYvEsAOl8PiSBA&page=1&ndsp=33&ved=1t:429,r:0,s:0 )

File:Light-microscope-diagram-1.gif

2011-04-05T14:32:38Z

RaniaBenzidane: Figure 2. Epifluorescent microscopy (http://www.google.ca/imgres?imgurl=http://static.howstuffworks.com/gif/light-microscope-diagram-1.gif&imgrefurl=http://www.howstuffworks.com/light-microscope4.htm&usg=__a3YeCsdDu4JGGFIlVGDPpOwUf8A=&h=312&w=346&sz=11&hl

Course:EOSC 475/ResearchProject

2011-04-05T14:26:24Z

RaniaBenzidane:

=== March 2nd, 2011

Some of you seem to be a bit confused about the annotated bibliography, so there is some info that might help:

The annotated bibliography should consist of references from the primary literature (i.e. articles from scientific journals) that you will use as resources for your Wiki. The format of these should be the citation, followed by a few sentences explaining the significance of the paper to the topic you are presenting. The annotated bibliography will be part of your Wiki page. I have included an example below.
Bergh O, Børsheim KY, Bratbak G, Heldal M (1989) High abundance of viruses found in aquatic environments. Nature 340:467-468. This manuscript is the first to report concentrations of viruses in seawater in excess of 10 million viruses per mL, and showed that these high abundances occurred in a variety of freshwater and marine environments.

A minimum of 10 references is needed for the annotated bibliography.

Caroline your TA :)

== EOSC475 Wiki page==

There is a requirement to produce a Wiki page on an aspect related to this course; you must produce an in-depth and critical examination of a topic that stems from a scientific paper related to the content of the course.

A list of suggested papers is on the WIKI (see below)
; '''Only one student can sign up for each paper and others can be selected but must be approved'''.
The project will make up 25% of the final grade.

It will be an ongoing process with progress evaluated on:

'''Friday, January 28''', (Research Project topic due),

'''Friday, March 4''' (Research Project outline and annotated bibliography due),and

'''Friday, April 1''' (Research Project final submission)

Plagiarism will result in a grade of 0 (see http://www.vpacademic.ubc.ca/integrity/policies.htm).

A few things are expected for your Wiki Project:

1. The topic should be related to paper in Marine Microbiology. Click here for paper list: http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/Ideas

2. The research project should be a CRITICAL review. So, include your opinion in the research project. Do not only review the paper.

3. Most, if not all, of your cited literature should be primary literature, which are peer-review scientific papers. Do not use websites or books, including encyclopedias, as references.

4. The length of the Wiki page should be about 10 pages.

If you have any questions about the wiki project please contact me (Caroline) at cchenard@eos.ubc.ca.

== EOSC475 - Wiki Project Launchpad Page ==

In order to keep the Research Projects for the students gathered within one subsection of this Wiki, we would like each student to create a link on this page (below) to their project. By keeping them here together, everyone can easily find each other's work. If you are curious about why we have chosen the wiki space for the Research Projects, it has to do with the affordances of the space. A wiki environment easily supports multipage, collaborative and hypertextual writing, something that feels a bit constrained within a weblog space. In this wiki space, you will be able to author multiple pages and create inter-textual links as well as links out to other materials that may be relevant to your work.

== Creating your top-level Wiki Project page ==

'''Step 1'''

Think of a good, short title for your research project. You will need to use CamelCase, which is a wiki syntax for words with capital letters joined together without a space. If I were writing about marine viruses, for example, I might use a link title: MarineViruses

'''Step 2'''

Look at the URL for this page up in the address bar in your browser. Depending on your browser it should look something like this:

[[File:Wiki4.jpg]]

You will need to create a new page on this wiki by adding in the name of the page you want to create. So, using my example again, I type in the following:

[[File:Wiki2.jpg]]

'''Make sure that you put a "/" in before you type in your new title, as that will put your page within the subsection of the ResearchProject page.'''

Type in the title of the page that you want to create and hit return on your keyboard.

'''Step 3'''

Mediawiki will come up with a screen that tells you that the page does not yet exist (unless, of course, it already does in which case you will need to come up with another, unique name), and you will have the option to edit the page.

[[File:Wiki3.jpg]]

Click on Edit page and then proceed to put in a couple bits of text to claim your space.

'''Step 4'''

Take note of the URL that appears in your browser address bar when you view your newly created page. That will be the URL for the top-level page of your Research Project. If you end up writing on multiple pages, just use the same process as described in the steps above to create subsection pages within your own page.

'''You only need to go on to Step 5 when you are ready to publish the URL for your Research Project. Please do so when you are ready for other students to have a link to your project.'''

'''Step 5'''

Add your top-level page to the list below and that way everyone will be able to find your work right from this landing page. You can, of course, add your name beside your link so that people can see who is authoring which Research Projects. For links within this Wiki server, you can use the portion of the URL after the "title=" You can also use the full URL if you prefer. Please place a link to your project in the list below.

''' Wiki projects:'''

* http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/BacterialRichness Farhad Mohaddes
* http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/Vvulnificus#Vibrio_vulnificus]Kevin's Wiki
http://wiki.ubc.ca/Course:EOSC_475/Researchprojectexample Research Project Example
* [http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/Acidification Will ocean acidification affect marine microbes?] Laura T's Wiki
* http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/DeepSeaPhototroph Emily Aitken's Wiki
* [http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/SargassoBacterioplankton Genetic diversity in Sargasso Sea bacterioplankton] Carrie Wan's Wiki
* http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/MarineViruses Anna-lize Mattam's Wiki
* [http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/BacterialMortality Viruses and protists cause similar bacterial mortality] Roya Elahi's Wiki
*[http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/AnammoxBacteria Anaerobic ammonium oxidation by anammox bacteria in the Black Sea] - Tysha Bell's Wiki
*[http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/GiantVirus A Giant Virus in Amoebae] - Emily Chen's Wiki
*[http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/MarineGenome Functional metagenomic profiling of nine biomes] - Ashley Smith's Wiki
*[http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/CyanobacteriaNFixation Cyanobacteria & Oceanic Nitrogen Fixation] - David Rowen's Wiki
* [[Course:EOSC_475/ResearchProject/MpVintheMedSea|MpV in the Med. Sea]] - Tyler Nelson's Wiki
*[[Course:EOSC_475/ResearchProject/ImpactsOfMarineViruses|Impacts of Marine Viruses]] - Dara Lo's Wiki
* [[Course:EOSC_475/ResearchProject/PathogenicityIsland|Pathogenicity Islands]] - Julia Wai's Wiki
* http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/iron - Taewook Kim's Wiki
*http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/ArchaealAbundance - Lauren Proteau's Wiki
* [http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/ArchaealEvolutionAndDiversity Archaeal Evolution and Diversity] Kevin Han's Wiki
*[http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/BacterialRhodopsin Bacterial rhodopsin: evidence for a new type of phototrophy in the sea] Henry Liu's Wiki
*[http://wiki.ubc.ca/Course:EOSC_475/MarineCommunityGenomics Marine Community Genomics ]- Trevor Leggat's Wiki
*http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/HydrothermalGeochemistry - Aaron Yeung

*http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/OceansFoodWeb - Arthur Keung's Wiki
*[http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/PicornalikeViruses High diversity of unknown picorna-like viruses in the sea] - Sam Soufi's Wiki
*http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/SulphurFluxOceanicPhytoplankton - Brad Reid's Wiki
*http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/bacterialcommunitydynamics - Jina Choi's Wiki
*http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/Vibrio_choleraeGeneticDiversity - Melissa Wood's Wiki
*[http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/GhostlyBacteria Total counts of marine bacteria include a large fraction of non-nucleoid containg bacteria (ghosts)] - Robyn Drayson's Wiki
* http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/BioluminescentDNARepair - Vinci Au's Wiki
* http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/CoralAssociatedBacteria - Andrea Brown's Wiki
* http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/BacteriophageDistribution - Khodadad Rasool Javaheri's Wiki

* http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/nitrogenfixingcyanobacteria - Saba Marzara
http://wiki.ubc.ca/Course:EOSC_475/ResearchProject//IronLimitation - Janice Setijadi's wiki

* http://wiki.ubc.ca/Course:EOSC_475/ResearchProject/Roleofmicrobes - Yasmin Taheri's Wiki

'''Reference:'''
Dobson, T., and Miller, J. (2009). ETEC540 - Research Project Launchpad Page. Retrieved from the UBC wiki on Dec. 21, 2009: http://wiki.ubc.ca/Course:ETEC540/2009WT1/Assignments/ResearchProject
*http://wiki.ubc.ca/The_Ubiquity_of_Species - Rachel's project.
http://wiki.ubc.ca/CRITICAL_REVIEW - Rania Benzidane

File:Funny-pictures-kitten-is-not-happy-with-you.jpg

2011-04-05T14:15:44Z

RaniaBenzidane: LOL cat

LOL cat

Course:EOSC 475/ResearchProject/Ideas

2011-01-25T22:46:04Z

RaniaBenzidane:

'''
'''Please sign up your name under the paper you are interested to critique. Only one person for each paper'''.

1. Ammerman,JW, Fuhrman, JA, Hagstrom, A, Azam, F. 1984. Bacterioplankton growth in seawater: Growth kinetics and cellular characteristics in seawater cultures. Marine Ecology Progress Series. 18:31-39.

'''Student name:'''

2. Angly, F. et al. 2006. The marine viromes of four oceanic regions. PLOS Biology 4: e368

'''Student name: Anna-lize Mattam'''

3. Azam, F, Fenchel, T, Field, JG, Gray, JS, Meyer-Reil, LA, Thingstad, F. 1983. The ecological role of water-column microbes in the sea. Marine Ecology Progress Series. 10:257-263.

'''Student name:Yasmin Taheri

4. Beatty, J.T., et al. 2005. An obligately photosynthetic bacterial anaerobe from a deep-sea hydrothermal vent. Proceedings of the National Academy of Sciences. 102:9306-9310.

'''Student name:Emily Aitken

5. Beja, O et al. 2002. Comparative genomic analysis of archaeal genotypic variants in a single population and in two different oceanic provinces. Applied and Environmental Microbiology. 68:335-345.

'''Student name:'''

6. Beja,O, et al. 2000. Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. Science. 289:1902-1906.

'''Student name:'''

7. Bergh,O, Borsheim, KY, Bratbak, G, Heldal, M 1989. High abundance of viruses found in aquatic environments. Nature. 340:467-468.

'''Student name:Dara Lo

8. Boetius,A et al. 2000. A marine microbial consortium apparently mediating anaerobic oxidation of methane. Nature 407:623-626.

'''Student name:'''

9. Brussaard CPD. 2004. Optimization of procedures for counting viruses by flow cytometry. Appl. Environ. Microbiol. 70: 1506-1513.

'''Student name:'''

10. Burns,BP, Goh, F, Allen, M, Neilan, BA. 2004. Microbial diversity of extant stromatolites in the hypersaline marine environment of Shark Bay,Australia. Environmental Microbiology. 6:1096-1101.

'''Student name:'''

11. Cerda-Cuellar, M, Jofre, J, Blanch AR. 2000. A selective medium and a specific probe for detection of Vibrio vulnificus. Appl. Environ.Microbiol 66:855-859.

'''Student name: Kevin Tsai'''

12. Choi,JW, Sherr, EB, Sherr, BF. 1996. Relation between presence-absence of a visible nucleoid and metabolic activity in bacterioplankton cells. Limnology and Oceanography. 41:1161-1168.

'''Student name:'''''''''Bold text''''''Bold text''''''

13. Church, MJ, Hutchins, DA, Ducklow, HW. 2000. Limitation of bacterial growth by dissolved organic matter and iron in the Southern Ocean. Applied and Environmental Microbiology. 66:455-466.

'''Student name:'''Janice Setijadi

14. Culley, AI, Lang, AS, Suttle, CA. 2003. High diversity of unknown picorna-like viruses in the sea. Nature. 424:1054-1057.

'''Student name:'''Sam Soufi

15. Czyz,A, Jasiecki, J, Bogdan, A, Szpilewska, H, Wegrzyn, G. 2000. Genetically modified Vibrio harveyi strains as potential bioindicators of mutagenic pollution in marine environments. Applied and Environmental Microbiology. 66:599-605.

'''Student name:'''

15. Czyz, A, Wrobel, B, Wegrzyn G. 2000. Vibrio harveyi bioluminescence plays a role in stimulation of DNA repair Microbiology 146:283-288

'''Student name:'''

16. Dang,H, Lovell CR. 2000. Bacterial primary colonization and early succession on surfaces in marine waters as determined by amplified rRNA gene restriction analysis and sequence analysis of 16S rRNA genes. Appl. Environ.Microbiol. 66:467-475

'''Student name:'''

17.Davis,PG, Sieburth, JM. 1984. Estuarine and oceanic microflagellate predation of actively growing bacteria: estimation by frequency of dividing-divided bacteria. Marine Ecology Progress Series. 19:237-246.

'''Student name:'''

18. DeLong,E.F. 1992. Archaea in coastal marine environments. PNAS 89: 5685-5689.

'''Student name:'''

19. DeLong,EF, et al. 2006. Community genomics among stratified microbial assemblages in the ocean's interior. Science. 311:496-503.

'''Student name:''' Trevor Leggat

20. Dinsdale,EA et al. 2007. Functional metagenomic profiling of nine biomes. Nature 452:629-32.

'''Student name:''' Ashley Smith

21. Ducklow,HW, Hill, SM. 1985. The growth of heterotrophic bacteria in the surface waters of warm core rings. Limnology and Oceanography. 30:239-259.

'''Student name:'''Rania Benzidane

22.Fenchel, T, Finlay BJ. 2004. The ubiquity of small species: Patterns of local and global diversity. Bioscience 54: 777-784.

'''Student name:'''

23. Fuhrman,JA, McCallum K, Davis, AA. 1993. Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans. Appl Environ Microbiol. 59:1294-1302.

'''Student name:'''

24.Fuhrman,JA, Noble RT. 1995. Viruses and protists cause similar bacterial mortality in coastal seawater. Limnol Oceaogr 40: 1236-1242

'''Student name: Roya Elahi

25. Fuhrman,JA et al. 2008. A latitudinal diversity gradient in planktonic marine bacteria. PNAS 105: 7774-7778.

'''Student name:'''FARHAD MOHADDES

26. Ghai,R et al. 2010. Metagenome of the Mediterranean deep chlorophyll maximum studied by direct and fosmid library 454 pyrosequencing. The ISME Journal. 4:1154-1166.

'''Student name:'''

27. Giovannoni, SJ, Britschgi, TB, Moyer, CL. 1990. Genetic diversity in Sargasso Sea bacterioplankton. Nature 345 60-63.

'''Student name:'''

28. Giovannoni, SJ, et al. 2005. Genome Streamlining in a cosmopolitan oceanic bacterium.Science 309:1242-1245

'''Student name:'''

29. Gonzalez,JM, Sherr,, EB, Sherr, BF. 1990. Size-selective grazing on bacteria by natural assemblages of estuarine flagellates and ciliates. Appl Environ Microbiol 56:583-589.

'''Student name:'''

30.Hallam,SJ et al. 2004. Reverse methanogenesis: testing the hypothesis with environmental genomics. Science. 305:1457-1462.

'''Student name:'''

31. Hewson,I. et al. 2009. Metagenomic potential of microbial assemblages in the surface waters of the central Pacific Ocean tracks variability in oceanic habitat Limnol Oceanogr 54:1981-1994.

'''Student name:'''

32. Howard,EC et al. 2006. Bacterial taxa that limit sulfur flux from the ocean.Science 314: 649-652.

'''Student name:'''

33. Hutchinson,GE. 1961. The paradox of the plankton. American Naturalist. 95:137-145.

'''Student name:'''Karina Gurdzhyan

34. Jedani,KE, Stroeher, UH, Manning, PA. 2000. Distribution of IS1358 and linkage to rfb-related genes in Vibrio anguillarum. Microbiology. 146:323-331.

'''Student name:'''

35. Jiang,SC, Matte, M, Matte, G, Huq, A, Colwell, RR. 2000. Genetic diversity of clinical and environmental isolates of Vibrio cholerae determined by amplified fragment length polymorphism fingerprinting. Applied and Environmental Microbiology. 66:148-153.

'''Student name:''' Melissa Wood

36. Joint,I, Doney, SC, Karl, DM. 2011. Will ocean acidification affect marine microbes? The ISME Journal. 5:1-7.

'''Student name:''' Laura Tamblyn

37. Karaolis,DKR, et al. 1999. A bacteriophage encoding a pathogenicity island, a type-IV pilus and a phage receptor in cholera bacteria. Nature 300:375-379.

'''Student name:''' Julia Wai

39. Karner, MB, DeLong, EF, Karl, DM. 2001. Archaeal dominance in the mesopelagic zone of the Pacific Ocean. 2001. Nature. 409:507-510.

'''Student name:'''

40.Kuypers, MMM, et al. 2003. Anaerobic ammonium oxidation by anammox bacteria in the Black Sea. Nature 422:609-611.

'''Student name:''' Tysha Bell

41. La Scola, B, et al. 2003. A giant virus in amoebae. Science. 299:2033.

'''Student name:''' Emily Chen

42. LaMontagne,MG, Leifer, I, Bergmann, S, Van De Werfhorst, LC, Holden, PA. 2004.Bacterial diversity in marine hydrocarbon seep sediments. Environmental Microbiology. 6:799-808.

'''Student name:'''

43. Li,WKW, et al. 1983. Autotrophic picoplankton in the tropical ocean. Science 219:292-295.

'''Student name:'''

44. Martin,JH et al. 1994. Testing the iron hypothesis in ecosystems of the equatorial Pacific Ocean. Nature. 371:123-129.

'''Student name:'''37950052

45. Massana, R, Castresana, J, Balague, V, Guillou, L, Romari, K, Groisillier, A,Valentin, K, Pedros-Alio, C. 2004. Phylogenetic and ecological analysis of novel marine stramenopiles. Applied and Environmental Microbiology. 70:3528-3534.

'''Student name:'''

46. Moran,MA et al. 2004. Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment. Nature 432:910-913.

'''Student name:'''

47. Moraru,C, Lam, P, Fuchs, PL, Kuypers, MMM, and Amann, R. 2010. GeneFISH- an in situ technique for linking gene presence and cell identity in environmental microorganisms. Environmental Microbiology. 12:3057-3073.

'''Student name:'''

48. Morris, RM, Rappe, MS, Connon,SA, Vergin, KL, Siebold, WA, Carlson, CA, Giovannoni, SJ. 2002. SAR11 clade dominates ocean surface bacterioplankton communities. Nature.420:806-810.

'''Student name:'''

49.Moisander, PH, et al. 2010. Unicellular cyanobacterial distributions broaden the oceanic N2 fixation domain. Science, 327:1512-1514.

'''Student name:'''

50. Mussmann,M et al. 2007. Insights into the genome of large sulfur bacteria revealed by analysis of single filaments. PloS Biology 5:1923-1937.

'''Student name:'''

51. Nagasaki, K, Tarutani, K,Yamaguchi, M. 1999. Cluster analysis on algicidal activity of HaV clones and virus sensitivity of Heterosigma akashiwo (Raphidophyceae). Journal of Plankton Research. 21:2219-2226.

'''Student name:'''

52. Pomeroy,LR. 1974. The ocean's food web, a changing perspective. Bioscience.24:499-504.

'''Student name:''' Arthur Keung

53. Riemann,L, Steward, GF, Azam, F, 2000. Dynamics of bacterial community composition and activity during a mesocosm diatom bloom. Appl.Environ.Microbiol 66, 578-587

'''Student name:'''Jina Choi

54. Rocap,G et al. 2003. Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature. 424:1042-1047.

'''Student name:'''

55. Rohwer,F, Seguritan, V, Azam, F, Knowlton, N. 2002. Diversity and distribution of coral-associated bacteria. Marine Ecology Progress Series. 243:1-10.

'''Student name: Andrea Brown

56. Sharon,I et al. 2007. Viral photosynthetic reaction center genes and transcripts in the marine environment. The ISME Journal. 1:492-501.

'''Student name:'''

57. Short,CM, Suttle, CA. 2005. Nearly identical bacteriophage structural gene sequences are widely distributed in both marine and freshwater environments. Appl Environ Microbiol 71:480-486

'''Student name:'''

58. Sogin, M.L. et al. 2006. Microbial diversity in the deep sea and the underexplored “rare biosphere.” Proceedings of the National Academy of Sciences USA 103:12115–12120.

'''Student name:'''Ari Shamash

59. Strzepek,RF, Maldonado, MT, Higgins, JL, Hall, J, Safi, K, Wilhelm, SW, Boyd, PW.2005. Spinning the “Ferrous Wheel”: the importance of the microbial community in an iron budget during the FeCycle experiment. Global Biogeochemical Cycles. 19.

'''Student name:'''

60.Venter,JC et al. 2004. Environmental genome shotgun sequencing of the Sargasso Sea. Science. 304:66-74.

'''Student name:'''

61. Walsh,D et al. 2009. Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones. Science. 326:578-582.

'''Student name:'''

62. Wilson,KM, Schembri, MA, Baker, PD, Saint, CP. 2000. Molecular characterization of the toxic cyanobacterium Cylindrospermopsis raciborskii and design of species-specific PCR. Applied and Environmental Microbiology. 66:332-338.

'''Student name:'''

63. Wilson,WH, et al. 2005. Complete genome sequence and lytic phase transcription profile of a Coccolithovirus. Science. 309:1090-1092.

'''Student name:'''

64. Zehr,JP, et al. 2001. Unicellular cyanobacteria fix N2 in the subtropical North Pacific Ocean. Nature. 412:635-638.

'''Student name: Saba Marzara'''

65. Zingone,A, Sarno, D, Forlani, G. 1999. Seasonal dynamics in the abundance of Micromonas pusilla (Prasinophyceae) and its viruses in the Gulf of Naples(Mediterranean Sea). Journal of Plankton Research. 21:2143-2159.

'''Student name:'''Tyler Nelson

66. Zweifel,UL, Hagstrom, A. 1995. Total counts of marine bacteria include a large fraction of non-nucleoid containg bacteria (ghosts). Applied and Environmental Microbiology. 61:2180-2185.

'''Student name: Robyn Drayson'''